| ExternalProgram.java |  | 1% |  | 0% | 76 | 80 | 310 | 319 | 13 | 17 | 0 | 1 |
| Feature.java |   | 69% |   | 60% | 170 | 384 | 344 | 1,152 | 13 | 117 | 0 | 1 |
| Entry.java |   | 32% |   | 24% | 75 | 111 | 205 | 316 | 28 | 55 | 0 | 2 |
| Selection.java |   | 27% |   | 16% | 105 | 129 | 221 | 311 | 21 | 42 | 0 | 1 |
| SimpleEntryGroup.java |   | 41% |   | 27% | 81 | 117 | 176 | 305 | 21 | 46 | 1 | 2 |
| Options.java |   | 72% |   | 47% | 89 | 165 | 151 | 498 | 15 | 57 | 0 | 1 |
| FilteredEntryGroup.java |  | 0% |  | 0% | 76 | 76 | 139 | 139 | 61 | 61 | 5 | 5 |
| SimpleComparisonData.java |  | 0% |  | 0% | 39 | 39 | 116 | 116 | 10 | 10 | 1 | 1 |
| ActionController.java |   | 55% |   | 59% | 27 | 50 | 50 | 135 | 3 | 17 | 0 | 1 |
| MegaBlastComparisonData.java |  | 0% |  | 0% | 12 | 12 | 41 | 41 | 6 | 6 | 1 | 1 |
| FeatureSegment.java |   | 64% |   | 48% | 28 | 53 | 45 | 137 | 6 | 24 | 0 | 1 |
| BlastM8ComparisonData.java |  | 0% |  | 0% | 12 | 12 | 44 | 44 | 6 | 6 | 1 | 1 |
| MSPcrunchComparisonData.java |  | 0% | | 0% | 8 | 8 | 45 | 45 | 7 | 7 | 1 | 1 |
| AlignMatch.java |  | 0% |  | 0% | 23 | 23 | 45 | 45 | 14 | 14 | 1 | 1 |
| ProcessMonitor.java |  | 0% |  | 0% | 6 | 6 | 34 | 34 | 2 | 2 | 1 | 1 |
| MUMmerComparisonData.java |  | 0% |  | 0% | 13 | 13 | 31 | 31 | 4 | 4 | 1 | 1 |
| SSAHAComparisonData.java |  | 0% | | 0% | 8 | 8 | 37 | 37 | 6 | 6 | 1 | 1 |
| FeatureKeyQualifierPredicate.java |   | 44% |   | 30% | 12 | 16 | 24 | 49 | 3 | 6 | 0 | 1 |
| SimpleGotoEventSource.java |  | 12% |  | 0% | 11 | 13 | 32 | 38 | 8 | 10 | 0 | 1 |
| ComparisonDataFactory.java |  | 0% |  | 0% | 7 | 7 | 16 | 16 | 2 | 2 | 1 | 1 |
| AlignMatchVector.java |  | 0% | | n/a | 11 | 11 | 19 | 19 | 11 | 11 | 1 | 1 |
| FeaturePredicateConjunction.java |   | 51% |   | 40% | 9 | 13 | 12 | 25 | 1 | 3 | 0 | 1 |
| SimpleExternalProgramMonitor.java |  | 0% | | 0% | 6 | 6 | 12 | 12 | 5 | 5 | 1 | 1 |
| FeatureSegmentVector.java |   | 65% | | 25% | 8 | 20 | 12 | 34 | 6 | 18 | 1 | 2 |
| FeatureVector.java |   | 64% | | 50% | 7 | 16 | 10 | 29 | 6 | 15 | 0 | 1 |
| EntrySourceVector.java |  | 55% | | 25% | 6 | 12 | 9 | 20 | 4 | 10 | 0 | 1 |
| ExternalProgramEvent.java | | 0% | | n/a | 4 | 4 | 9 | 9 | 4 | 4 | 1 | 1 |
| FeatureChangeEvent.java |  | 82% |   | 50% | 7 | 16 | 5 | 28 | 2 | 10 | 0 | 1 |
| EntryChangeEvent.java |  | 70% | | n/a | 2 | 7 | 6 | 20 | 2 | 7 | 0 | 1 |
| ActionVector.java |  | 69% | | 25% | 3 | 7 | 3 | 13 | 1 | 5 | 0 | 1 |
| Action.java |  | 77% |  | 62% | 3 | 10 | 2 | 18 | 0 | 6 | 0 | 1 |
| ExternalProgramVector.java | | 62% | | 0% | 3 | 7 | 4 | 11 | 2 | 6 | 0 | 1 |
| FeaturePredicateVector.java | | 65% | | n/a | 1 | 5 | 3 | 9 | 1 | 5 | 0 | 1 |
| FeaturePatternPredicate.java | | 0% | | n/a | 2 | 2 | 4 | 4 | 2 | 2 | 1 | 1 |
| EntryVector.java |  | 83% | | 50% | 4 | 12 | 4 | 20 | 2 | 10 | 0 | 1 |
| FeatureFromVectorPredicate.java | | 0% | | n/a | 2 | 2 | 4 | 4 | 2 | 2 | 1 | 1 |
| GotoEvent.java | | 0% | | n/a | 2 | 2 | 4 | 4 | 2 | 2 | 1 | 1 |
| AlignmentSelectionChangeEvent.java | | 0% | | n/a | 1 | 1 | 4 | 4 | 1 | 1 | 1 | 1 |
| ClipBoard.java | | 0% | | n/a | 3 | 3 | 5 | 5 | 3 | 3 | 1 | 1 |
| EntryGroupChangeEvent.java | | 65% | | n/a | 2 | 4 | 2 | 7 | 2 | 4 | 0 | 1 |
| ComparisonDataParseException.java | | 0% | | n/a | 1 | 1 | 2 | 2 | 1 | 1 | 1 | 1 |
| ExternalProgramException.java | | 0% | | n/a | 1 | 1 | 2 | 2 | 1 | 1 | 1 | 1 |
| OptionChangeEvent.java | | 70% | | n/a | 1 | 2 | 1 | 4 | 1 | 2 | 0 | 1 |
| SelectionChangeEvent.java | | 70% | | n/a | 1 | 2 | 1 | 4 | 1 | 2 | 0 | 1 |
| ExternalProgramThread.java | | 0% | | n/a | 1 | 1 | 2 | 2 | 1 | 1 | 1 | 1 |
| LastSegmentException.java | | 0% | | n/a | 1 | 1 | 2 | 2 | 1 | 1 | 1 | 1 |
| ChangeEventVector.java | | 100% | | n/a | 0 | 4 | 0 | 7 | 0 | 4 | 0 | 1 |
| FeatureKeyPredicate.java | | 100% | | n/a | 0 | 2 | 0 | 4 | 0 | 2 | 0 | 1 |
| ChangeEvent.java | | 100% | | n/a | 0 | 1 | 0 | 2 | 0 | 1 | 0 | 1 |