| Element | Missed Instructions | Cov. | Missed Branches | Cov. | Missed | Cxty | Missed | Lines | Missed | Methods |
| Total | 335 of 1,216 | 72% | 58 of 154 | 62% | 51 | 104 | 76 | 246 | 3 | 22 |
| main(String[]) | 0% | 0% | 6 | 6 | 24 | 24 | 1 | 1 | ||
| BCFReader(String) | 45% | 50% | 2 | 3 | 11 | 23 | 0 | 1 | ||
| nextRecord(String, int, int) | 57% | 57% | 9 | 15 | 11 | 23 | 0 | 1 | ||
| getByteSize(String, int) | 48% | 50% | 6 | 9 | 8 | 17 | 0 | 1 | ||
| getParts(byte[], VCFRecord) | 77% | 67% | 9 | 20 | 8 | 29 | 0 | 1 | ||
| queryIndex(int, int) | 65% | 50% | 4 | 5 | 3 | 10 | 0 | 1 | ||
| readVCFRecord() | 92% | 75% | 6 | 13 | 4 | 36 | 0 | 1 | ||
| loadIndex() | 83% | 83% | 1 | 4 | 1 | 15 | 0 | 1 | ||
| close() | 0% | n/a | 1 | 1 | 3 | 3 | 1 | 1 | ||
| readHeader() | 94% | 75% | 2 | 5 | 1 | 18 | 0 | 1 | ||
| getSeqIndex(String) | 80% | 50% | 2 | 3 | 1 | 4 | 0 | 1 | ||
| getMetaData() | 0% | n/a | 1 | 1 | 1 | 1 | 1 | 1 | ||
| getGTString(byte) | 92% | 50% | 1 | 2 | 0 | 1 | 0 | 1 | ||
| getArray(int) | 100% | 87% | 1 | 5 | 0 | 14 | 0 | 1 | ||
| getPLString(byte[], int) | 100% | 100% | 0 | 4 | 0 | 12 | 0 | 1 | ||
| headerToString() | 100% | 100% | 0 | 2 | 0 | 7 | 0 | 1 | ||
| query(String, int, int) | 100% | n/a | 0 | 1 | 0 | 1 | 0 | 1 | ||
| static {...} | 100% | n/a | 0 | 1 | 0 | 3 | 0 | 1 | ||
| seek(long) | 100% | n/a | 0 | 1 | 0 | 2 | 0 | 1 | ||
| byteToInt(byte) | 100% | n/a | 0 | 1 | 0 | 1 | 0 | 1 | ||
| getSeqNames() | 100% | n/a | 0 | 1 | 0 | 1 | 0 | 1 | ||
| getFileName() | 100% | n/a | 0 | 1 | 0 | 1 | 0 | 1 |